| Abbreviations | Meaning |
 | ARP | Assimilation Regulatory Protein |
| ARP | Apolipoprotein Regulatory Protein |
| ASDB | Active Substance Database; Annotation And Similarity [protein] Database |
| ASGP | Asialoglycoprotein |
| ASGR | Asialoglycoprotein Receptor |
| ASIP | Atypical Protein Kinase C Isotype-specific Interacting Protein |
| ATM | Asynchronous Transfer Mode; Asynchronous Transfer Protocol; Ataxia-telangiectasia-mutated [protein]; Atmosphere; Average Time Of Maintenance |
| ATR | Ataxia-telangiectasia And Rad3-related [protein] |
| AUP | Australian Antigen Protein |
| AVP | Antiviral Protein |
| AYP | Autolyzed Yeast Protein |
| AZGP | Zinc-alpha-2-glycoprotein |
| B-LPH | Beta-lipoprotein Hormone |
| BAPP | Beta Amyloid Precursor Protein |
| BCCP | Biotin Carboxyl Carrier Protein |
| BCFP | Breast Cyst Fluid Protein |
| BIP | Bacterial Intravenous Protein |
| BIP | Binding Protein |
| BIRP | BIR-containing Proteins |
| BJ | Bence Jones (proteinuria) |
| BJ | Bence Jones [protein, Proteinuria]; Biceps Jerk; Bielschowsky-Jansky [syndrome]; Bones And Joints |
| BJP | Bence Jones Protein Or Proteinuria |
| BLP | Beta-lipoprotein |
| BMP | Bitmap; Bone Morphogenetic Protein |
| BMP | Bone Morphogenetic Protein |
| BMPI | Bronchial Mucous Proteinase Inhibitor |
| BP | Basic Protein |
| BP | Beta-protein |
| BP | Binding Protein |
| BPI | Bactericidal Permeability Increasing Protein |
| BPI | Bactericidal/permeability Increasing [protein] |
| BPM | Body Protein Monitor |
| BPS | Brain Protein Solvent |
| BRAT | A Fusion Protein Between The Membrane Protein Bacteriorhodopsin (BR) And The Catalytic Subunit Of Aspartyl Transcarbamylase From Escherichia Coli |
| BSCP | Bovine Spinal Cord Protein |
| BSP | Bone Sialoprotein; Bromosulphthalein |
| C | Capsid Protein |
| C1-9 | Complement Proteins 1 To 9 |
| C4BP | Complement 4 Binding Protein |
| CA | Capsid Protein |
| CAAX [BOX] | Protein Segment In Which C Is Cysteine, A Is Usually But Not Always An Aliphatic Amino Acid, And X Is Methionine Or Serine |
| CABP | Calcium-binding Protein |
| CAK | Cyclic Adenosine Monophosphate [cAMP] Dependent Protein Kinase |
| CAMK | Calmodulin-dependent Protein Kinase |
| CAMPASS | Cambridge Database On Protein Alignments Organized As Structural Superfamilies |
| CAP | Cell Attachment Protein |
| CAP | Catabolite Gene Activator Protein |
| CAP | Cationic Antimicrobial Protein; Circumference Of Apex |
| CASPR | Contactin-associated Protein |
| CBP | Calcium-binding Protein |
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